Package: barriers Version: 1.8.1-1 Architecture: i386 Maintainer: Ronny Lorenz Installed-Size: 172 Depends: libc6 (>= 2.34), perl Filename: i386/barriers_1.8.1-1_i386.deb Size: 64592 MD5sum: 9a263f68ec58f28d15bfe930c97dfe24 SHA1: 2979754431bd8b543d412c00e2c1594d296919f4 SHA256: bcdc966bc4abc0284553acc6922316f3dae31ace7c73758528852ecff09b15b3 Section: science Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Compute local minima and energy barriers of a landscape The program barriers reads an energy sorted list of conformations of a landscape, and computes local minima and energy barriers of the landscape. For RNA secondary structures, suitable input is produced by RNAsubopt For each local minimum found it prints to stdout, the conformation of the minimum, its energy, the number of the "parent"-minimum it merges with, and the height of the energy barrier. Additional information on each minimum, such as saddle point conformation and basin sizes can be included via options. A PostScript drawing of the resulting tree is written to "tree.ps" in the current directory. Package: barriers Version: 1.8.1-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 162 Depends: libc6 (>= 2.34), perl Filename: amd64/barriers_1.8.1-1_amd64.deb Size: 61796 MD5sum: d21b5b73583c42e2a84a280bcac47802 SHA1: d4ad089f3f9ebbe6d18d1a21edca104846071774 SHA256: 99133c05bd5145ec60c3b10fe83d633e8ad1bd3be6b1b1b94416bdbeada90f58 Section: science Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Compute local minima and energy barriers of a landscape The program barriers reads an energy sorted list of conformations of a landscape, and computes local minima and energy barriers of the landscape. For RNA secondary structures, suitable input is produced by RNAsubopt For each local minimum found it prints to stdout, the conformation of the minimum, its energy, the number of the "parent"-minimum it merges with, and the height of the energy barrier. Additional information on each minimum, such as saddle point conformation and basin sizes can be included via options. A PostScript drawing of the resulting tree is written to "tree.ps" in the current directory. Package: barriers-dbgsym Source: barriers Version: 1.8.1-1 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Ronny Lorenz Installed-Size: 147 Depends: barriers (= 1.8.1-1) Filename: i386/barriers-dbgsym_1.8.1-1_i386.deb Size: 126932 MD5sum: 34efdd87245250abb545417a1c044586 SHA1: 5ba54d628967deca8c82a19ac20e49d038359f39 SHA256: a3a20c0969ed3a0c0612f2d09e7057019ef4db064a59bee5884890dc5fc3694f Section: debug Priority: optional Description: debug symbols for barriers Build-Ids: 3eebf4c5808921eb597b45f867aa99ac2fcd8113 7b1856c9018a854fb8728829ae2f0e44194fc690 Package: barriers-dbgsym Source: barriers Version: 1.8.1-1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 159 Depends: barriers (= 1.8.1-1) Filename: amd64/barriers-dbgsym_1.8.1-1_amd64.deb Size: 134132 MD5sum: 48e9718b79dc47540916b2109ff1d60a SHA1: 0e1e8724ba9b60befee6f00cf08531da3a5bfaf9 SHA256: 2e52caffa0e4d2b831d04a26f2606df65967021022cb0d997f866bb3a2143c71 Section: debug Priority: optional Description: debug symbols for barriers Build-Ids: 50c57e6125ff767a7379f62c4b55a3f91a5cd210 877779cb81eb962068a1839b21b9c7550d94cf05 Package: mlapack-dev Source: mlapack Version: 0.8.1-2 Architecture: i386 Maintainer: Maho Nakata Installed-Size: 98141 Depends: libc6 (>= 2.29), libgcc-s1 (>= 4.4), libstdc++6 (>= 5.2), libgomp1, libquadmath0, libgmp-dev, libmpfr-dev, libmpc-dev, libqd-dev Conflicts: mlapack-dev Provides: mlapack-dev Filename: i386/mlapack-dev_0.8.1-2_i386.deb Size: 18724412 MD5sum: 7898b27f4df3173e216a362f3d939eb2 SHA1: a7e82ee4f23585ac0dae28010a2f810e0fce0a6e SHA256: 52cb9d90b767e85cb9551322b83a1cd4d9e2ec8980a063ef0021da1dfb380cd6 Section: devel Priority: optional Description: mlapack - MPACK multi precision linear algebra package development files The MPACK is a multiprecision linear algebra package based on BLAS and LAPACK. This package is rewritten in C++, and supports several high precision libraries like GMP, MPFR and QD etc so that users can choose for user's convenience. The MPACK is a free software (2-clause BSD style license with original license by LAPACK). Package: mlapack-dev Source: mlapack Version: 0.8.1-2 Architecture: amd64 Maintainer: Maho Nakata Installed-Size: 107928 Depends: libc6 (>= 2.29), libgcc-s1 (>= 4.3), libstdc++6 (>= 5.2), libgomp1, libquadmath0, libgmp-dev, libmpfr-dev, libmpc-dev, libqd-dev Conflicts: mlapack-dev Provides: mlapack-dev Filename: amd64/mlapack-dev_0.8.1-2_amd64.deb Size: 19485616 MD5sum: 65c997839c6557f44828ea73e8a19db2 SHA1: b5163fba6a6d707df8c120ba4c40c8aeaead0c77 SHA256: 9d00a8aa825d9b64cf80b894ea372200769c52ca0b9c867070415dba3a96447f Section: devel Priority: optional Description: mlapack - MPACK multi precision linear algebra package development files The MPACK is a multiprecision linear algebra package based on BLAS and LAPACK. This package is rewritten in C++, and supports several high precision libraries like GMP, MPFR and QD etc so that users can choose for user's convenience. The MPACK is a free software (2-clause BSD style license with original license by LAPACK). Package: mlapack-dev-dbgsym Source: mlapack Version: 0.8.1-2 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Maho Nakata Installed-Size: 106093 Depends: mlapack-dev (= 0.8.1-2) Filename: i386/mlapack-dev-dbgsym_0.8.1-2_i386.deb Size: 104896092 MD5sum: 2546ade701d5aa6126062f74c3414e3e SHA1: 09f237dae16135194e2efcab988633efcc24f1ae SHA256: c0af8ca7ba40bcf6bd6e538b8d65d2e7393f6d638b3812d84a5ca0f8ebec6f2b Section: debug Priority: optional Description: debug symbols for mlapack-dev Build-Ids: 0290126a422ece0ea0ceea3e0fc8c5b5fa0e02d4 03bbf0cf03501296d7eea18e04068d2def9f60aa 05fcb5efd81a5db7f27b957d44c15b440ebc66a1 10d722d692b8b1a1e9f1fcdc30aa748e5c1ed635 24c6b99da94a38e46e13f9885debb232ea361366 2a4bf6614d416d2771a6093ba50cb6b73e906fa3 350dea6f468ecfa8eb6f12586cc5be2cf8e1fdaa 4291ae958efc4dd506b102c56fb986be5bfc26df 4860ed7752a9c8bd689991452d20120e009b847a 4c7cc0255d04e946460f5d3f94b710dc814776f4 760e297fef7bdcaa334947f8f4a09f9c0ce125e1 abae46706d1931e009023fd36592164db1dc57c9 ac0552b234c8286f0f6b339a17855f9ada74a1ba eb172b2ca40019da662a5e69a57c63ce69f14ffb f4a89ce7010bffef0961ba1b2795f3af65cb0cef Package: mlapack-dev-dbgsym Source: mlapack Version: 0.8.1-2 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Maho Nakata Installed-Size: 118232 Depends: mlapack-dev (= 0.8.1-2) Filename: amd64/mlapack-dev-dbgsym_0.8.1-2_amd64.deb Size: 117443616 MD5sum: 6ab26a6190c4a7c1ab3a04f0e5272340 SHA1: 488e351a01e5603e6a4af7d876d6f35e2731e31b SHA256: 9639e6ba1b7d667fa616fc172ac4af2b12e8f323280a2f667d319b7e1707d247 Section: debug Priority: optional Description: debug symbols for mlapack-dev Build-Ids: 03ccaa745003312e335756d1e04f9572f953e6bb 1ae17c50a88be7aae8a4a278b5b11a328a9df377 21478f961859a9f2f08a1575a42c1ba6c17d9d13 2a1eec056819b03b8c0469f9c3f5fed028c08512 2d4b5bd50b3a5c58b8118abb67b402817500f02d 4a27abc76e66db8f74dd42a439290cbd4ab4e29c 4d68f3174bb2750f6cef00676ce221ae9710c015 5874e55f70b287548e8fec767bf9e0d718155bd5 7fe726bc96fb631d7de7d5edec1f9040ae3b3cdd 8fc1cebfad46550907ae0f2d254a30052a6e4a90 c49a362950a639ce85f7b3e2996309104520cc20 c4a7084fafd2d175b57e729918f06348a023a798 cfaca8d316d0f8c618590b2a6c4a7b406d8a4e0e d7d44da4d44d1e66b590912ae92636af1158e80d dd88d2eeca22571a1342ef04b1caf65b8ab7e320 Package: perl-rna Source: viennarna Version: 2.7.0-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 10901 Depends: perl (>= 5.36.0-7+deb12u2), perlapi-5.36.0, libc6 (>= 2.35), libgcc-s1 (>= 4.0), libgomp1 (>= 4.9), libgsl27 (>= 2.7.1), libmpfr6 (>= 3.1.3), libstdc++6 (>= 11) Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/perl-rna_2.7.0-1_amd64.deb Size: 2004144 MD5sum: f6ee5ddc334cc8f84ed5882bd2424c3a SHA1: f06034352d4e817af098078d9eae20a9c30785c6 SHA256: f360c267e471654ce446a079a3cf44194aa70c94bf3ffec961f09d7aefd4486a Section: perl Priority: optional Description: Perl bindings to ViennaRNA RNAlib The RNA module to access RNAlib C-library functions from within Perl scripts Package: perl-rna-barrier Source: barriers Version: 1.8.1-1 Architecture: i386 Maintainer: Ronny Lorenz Installed-Size: 28 Depends: perl:any, perl, perl-rna Filename: i386/perl-rna-barrier_1.8.1-1_i386.deb Size: 7524 MD5sum: 6ab0797df2fae921780f0d4f00f06c63 SHA1: 3cb5ff90eb3367baa3dea90ec35630a4f3b011fa SHA256: f86534924e6f21f61a8673b72aae11ba5e2deacd391ecf3fd7fec7135d502166 Section: perl Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Perl module and scripts for Barriers The RNA/barrier module and perl scripts to access some functionality of the Barriers program Package: perl-rna-barrier Source: barriers Version: 1.8.1-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 28 Depends: perl:any, perl, perl-rna Filename: amd64/perl-rna-barrier_1.8.1-1_amd64.deb Size: 7524 MD5sum: 9550d57ab48fde40a14befe75166c48b SHA1: 8f3ef440cf2a1e6b1f27653c9e1d8799d6080739 SHA256: b4aaa570fd050274ef1d5c8c6fa0834451f23f9ba9091b9d832f230174bce920 Section: perl Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Perl module and scripts for Barriers The RNA/barrier module and perl scripts to access some functionality of the Barriers program Package: perl-rna-dbgsym Source: viennarna Version: 2.7.0-1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 12826 Depends: perl-rna (= 2.7.0-1) Filename: amd64/perl-rna-dbgsym_2.7.0-1_amd64.deb Size: 11782556 MD5sum: d4617c38d7411fa0701ac3a3fe3d7549 SHA1: 76f368ab85e53a85c966f9ef873559c617206027 SHA256: 1f6e3daf1e4efe843f53db9298654442e08fd4716c30c8c8bef711e4d6261d60 Section: debug Priority: optional Description: debug symbols for perl-rna Build-Ids: b3eca97670ed1743ac16605ea709882b10c08191 Package: python3-rna Source: viennarna Version: 2.7.0-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 11019 Depends: python3 (<< 3.12), python3 (>= 3.11~), python3:any, libc6 (>= 2.35), libgcc-s1 (>= 4.0), libgomp1 (>= 4.9), libgsl27 (>= 2.7.1), libmpfr6 (>= 3.1.3), libstdc++6 (>= 11) Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/python3-rna_2.7.0-1_amd64.deb Size: 1921804 MD5sum: 30eac2979fe5dfd6c7e9c9054fe82f22 SHA1: 79aa78f3863ae16ba491975fad6e037a6fc80c33 SHA256: 5aaac239bbe4c155cdde1094125226a325aa7e79cf0e0a8fb4dc0bde93df0fa2 Section: python Priority: optional Description: Python 3 bindings to ViennaRNA RNAlib The RNA class to access RNAlib C-library functions from within Python 3 scripts Package: python3-rna-dbgsym Source: viennarna Version: 2.7.0-1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 13155 Depends: python3-rna (= 2.7.0-1) Filename: amd64/python3-rna-dbgsym_2.7.0-1_amd64.deb Size: 11805524 MD5sum: 5218edeb00db46c1fdbb07b8883916c3 SHA1: cf4bef886fd2cffefce1c1bc7ccfb485fdfd011c SHA256: 697fffeab89945c76b38c05d6d91cce2d947f46c1e0dfacf2b8cbc6344d3f5f0 Section: debug Priority: optional Description: debug symbols for python3-rna Build-Ids: 09b080aedef972ceb5023b89263ce1b8064e4910 Package: viennarna Version: 2.7.0-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 36656 Depends: libgomp1 (>= 4.9), libgsl27 (>= 2.7.1), libmpfr6 (>= 3.1.3), liblapack | liblapack3, liblapacke, libc6 (>= 2.35), libgcc-s1 (>= 3.3.1), liblapack3 | liblapack.so.3, libstdc++6 (>= 11) Recommends: python3-rna, perl-rna Breaks: vienna-rna (<< 2.2.1-2) Replaces: vienna-rna (<< 2.2.1-2) Filename: amd64/viennarna_2.7.0-1_amd64.deb Size: 3152564 MD5sum: 376f9f62ced8e653ad1ab5a977345b5b SHA1: 6b2b80287d7662bea7e1bf7e16e198d6c000a050 SHA256: 0d819a1a580b7786dc30f4dc011c523e7dc3975f4c8f1ec2be8c1da6e9abd50e Section: science Priority: optional Description: Vienna RNA Package - Core The Vienna RNA Package Core consists of several executable programs and various scripts for the prediction and comparison of RNA secondary structures. Package: viennarna-dbgsym Source: viennarna Version: 2.7.0-1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 32583 Depends: viennarna (= 2.7.0-1) Filename: amd64/viennarna-dbgsym_2.7.0-1_amd64.deb Size: 28389300 MD5sum: cff4b93285a4d24cc515dbcb68c3eb97 SHA1: 8ee7e9325023d63e13dda1255e91fcc0998f28b2 SHA256: 5c0b09a23a3abb05cc5e50a004ee8a0d910e1eb652bc52af944bc285947c9e7b Section: debug Priority: optional Description: debug symbols for viennarna Build-Ids: 070534f26347fe0cc2390902d1da03c13b5e3116 09b1174c7828b6d67e400440aacecf03632c45c9 0e2abf41de6baef7fd80fd5cdde06b6bb5d7f2ba 184aef0ba90df550ba6dd078ef01eec875a67867 301dca2c7fdb02c70bb33dcc2347b7de4084c320 390a977355d3efc5033e87e91a4df0eec099c8b9 4664d011eb84d183b00182c38f50f9622619cdc6 4739a2eb479415ab3352592f296c1fcbd1701a9e 48a58454e88f295d9a9127b82e45b8119899f91c 56965187abff529613a140cc79e5f5d8142091a3 66514913382cf01c19eb6bdf0a72c8252a49819b 66b14261323984cc229b7a6113d82985c516981c 76759672c43020daf757546fe84accf1f53309b0 7bc4397ab4f911832a76971ec25d6cfaabfee92d 88dcc27cfcd20348ff610fd60eebb420228b4bd6 899f2bf5d8faab38d125d47e544871ef77e93c0d 90d450cd8986aa13ac250edd5b28864fb24e1790 932e9437d6f0ef32683cc7879c30788120fd189f 99fed72547f89aa5401fce0b67373dba9e87567f 9a3f978496a241ed761e01b5443f249de3dd77f5 9c4e36783f9c2cb0a90282eeab89e732786da4d3 a287a6d12ed7a8024e9bb12b19b2eb3887f05b1e a458423955b1cc9c172d9e42a4e78fcc2ac4142a abd347b0600cf8357c727d8c38b0a55be1d30f1b b5b544f8f5978e043186fb1f948058949f1c2540 b83dd7c0fb7449375d081b6373c5c4dce1affb0f bba9f9c13a9b183df9af023d620573ed0aaf1af4 c4fb273f15e9f0fad0ac4d77ff780137be328437 d33d6166eddc08dec0a279f0cf53eedaa8279468 e3e374cb185c29a45877db225b0a1e8c47afcd34 f2b61d5c1d54f0d3b15a9a33474f01a2da56ec54 f64510472c233bcf2950e066f706f5478af64901 f9fceb68b232fe05afc5256c9a1a8d82de28c129 fc531377df6a44b81b41d07c9cb1ee7c173bd9f5 Package: viennarna-dev Source: viennarna Version: 2.7.0-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 95242 Depends: libgsl0-dev | libgsl-dev, libmpfr-dev Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/viennarna-dev_2.7.0-1_amd64.deb Size: 29665216 MD5sum: 30cb71ced2ac94736711919f152aee7f SHA1: b599c3132af8d5dd991dfbb33de9e554615bde3c SHA256: f1fedd1664d8a0a23eb05b0177d701d5a55ca0acc0d22ab8381665354c5171e7 Section: devel Priority: optional Description: ViennaRNA Package - RNAlib Development files Header files and static RNAlib C-library of the ViennaRNA Package Package: viennarna-doc Source: viennarna Version: 2.7.0-1 Architecture: all Maintainer: Ronny Lorenz Installed-Size: 25787 Conflicts: vienna-rna (<< 2.2.1-2) Filename: all/viennarna-doc_2.7.0-1_all.deb Size: 11975860 MD5sum: 543c9d1718f9bd5d8de7cf9d3c210b65 SHA1: def003f1d65275ed58d253822e3a3203c03e8c70 SHA256: d37c282ae404292177347fb2b7cdc5eb09bdbbaf52493eada0e0502d1f178dce Section: doc Priority: optional Description: ViennaRNA Package - RNAlib Reference Manual Reference Manual for RNAlib C-library in PDF and HTML format